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CABRI Guidelines for Catalogue Production
Guidelines prepared for CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN
Page layout by CERDIC
Data input & authentication for human and animal cell lines
Data Sets
Data entry and validation
- Cell line name
Field |
Cell line name |
Description |
name given to the cell, originally name given by the depositor |
Input process |
new entry for existing cells :CABRI agreed list of cell names
new entry for new cells: as given by depositor
existing catalogues: retrieval by SRS should be possible using list of every possible spelling of a name. |
Required for |
MDS |
- Accession number
Field |
Accession number |
Description |
collections’ own accession number |
Input process |
automatically given, to avoid duplicates or absence of identifier |
Note |
a CABRI accession number is given, but only for internal purposes |
Required for |
MDS |
- Brief description
Field |
Brief description |
Description |
brief listing of :
- species
- strain
- tissue
- tumour
- pathology
- transformed/transfected |
Input process |
Reference lists:
- ‘Dorland’s Illustrated Medical Dictionary’, 27th edition, Saunders
-strains are in accordance with the ‘Subsidiary of Harcourt Brace Jovanovich, Publishers’, Academic Press: The Laboratory Rat, The Mouse in Biomedical Research, The Biology of the Laboratory Rabbit
-pathologies are in accordance with the ‘On-Line Mendelian Inheritance in Man (OMIM)’, http://www.ncbi.nlm.nih.gov/Omim
- CABRI agreed lists: species,tissues,tumours |
Required for |
MDS |
- Description and other remarks on the cell line
Field |
Description and other remarks on the cell line |
Description |
contain ["verbose" listing] of:
- species
- strain
- tissue
- tumour
- pathology
- transformed/transfected
- age
- sex
- derived from |
Input process |
Reference lists:
- ‘Dorland’s Illustrated Medical Dictionary’, 27th edition, Saunders
-strains are in accordance with the ‘Subsidiary of Harcourt Brace Jovanovich, Publishers’, Academic Press: The Laboratory Rat, The Mouse in Biomedical Research, The Biology of the Laboratory Rabbit
-pathologies are in accordance with the ‘On-Line Mendelian Inheritance in Man (OMIM)’, http://www.ncbi.nlm.nih.gov/Omim
- CABRI agreed lists: species,tissues,tumours |
Required for |
MDS |
- Depositor name and address
Field |
Depositor name and address |
Description |
depositor name
address of the Institution |
Input process |
CABRI agreed list for country: name based on country code file retrieved from: ftp://ftp.ripe.net/iso3166-countrycodes
updated by the RIPE Network Co-ordination Centre, in co-ordination with the ISO 3166 Maintenance Agency at DIN Berlin.
Exception for UK, USA, USSR, Netherlands, North Korea |
Required for |
MDS |
- Reference paper
Field
|
Reference paper
|
Description
|
original paper [if available]
|
Input process
|
new entry:
JournalTitle Year
;
Volume
(
issue
):
beginning page#
-
ending page#
The title is abbreviated following international standard rules (ISSN).
Abbreviations are without dot. Authors and title of the article are not
mentioned.
existing catalogues: conversion by SRS following CABRI agreed
standard
This reference can be followed by the Pubmed ID enclosed within
square brackets as follows: [PMID: 1234567], where '1234567' is the
Pubmed ID of the paper |
Required for |
MDS |
- Morphology and growth characteristics
Field |
Morphology and growth characteristics |
Description |
Morphology
growth characteristics (monolayer, suspension, etc.) |
Input process |
Reference lists:
-morphology: using CABRI agreed list
- ‘Dorland’s Illustrated Medical Dictionary’, 27th edition, Saunders |
Required for |
MDS |
- Culture conditions
Field |
Culture conditions |
Description |
culture medium
subculture routine
incubation
harvest |
Input process |
respect order of the items
1. culture medium, 2. subculture routine 3. incubation, 4. Harvest |
Required for |
MDS |
- Viruses
Field |
Viruses |
Description |
absence/presence
type of virus |
Input process |
In case of absence of data related toViruses, input the following sentence:"There is no evidence for the presence of infectious viruses".
Reference lists:
- CABRI agreed list
- ‘Review of Medical Microbiology’, seventeenth ed., Appleton & Lange;
- the WWW biological site ‘All the virology on the WWW’, ( http://www.virology.net/garryfavweb.html) |
Required for |
MDS |
- Properties
Field |
Properties |
Description |
Immunology
receptors
susceptibility to viruses |
Input process |
Free text |
Requred for |
MDS |
- Passage
Field |
Passage |
Description |
passage no |
Input process |
when unknown, put ‘unknown’ |
Required for |
RDS |
- Release conditions/Restrictions
Field |
Release conditions/Restrictions |
Description |
release conditions/restrictions
patents |
Input process |
release conditions/restrictions: enter "no", or a text field describing the appropriate restrictions: hazard group, import/export regulations, .. The text may contain codes which refer to text files explaining the restrictions in more detail.
patents: EPO standard rules |
Required for |
MDS |
- Hazard
Field |
Hazard |
Description |
hazard classification of the cell line [e.g. class II containment]
EU related hazard information rules
country-specific related hazard information rules |
Input process |
- classifications available on the CABRI Web site: see Guidelines for Quality Management
- ACDP category list: http://www.doh.gov.uk/bioinfo.htm |
Required for |
MDS |
- Species validation tests
Field |
Species validation tests |
Description |
Should contain tests and results of tests made to confirm species of cell lines |
Input process |
CABRI agreed list |
Required for |
RDS |
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© The CABRI Consortium 1999 -
2023
This work cannot be reproduced in whole or in part without the express written permission of the CABRI consortium.
Site maintained by Paolo Romano. Last revised: February 2023.
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